KaiLi-2324

Hi, @nansne Did you solve the problem? I encountered the same error.

Hi @dawe . Thanks for the prompt reply. I ran sc.pp.neighbors on sdata.table, and I got the following error "ValueError: `A` must be of floating or complex floating data type."...

Hi @dawe . Thanks for the reply. I got the following error "AttributeError: 'SpatialData' object has no attribute 'pl'" when I was running spdata.pl.render_images().pl.render_shapes(color='nsbm_level_1', fill_alpha=.7).pl.show(title='Level 1', colorbar=True). The error is...

Hi, @ckmah . Thanks for the suggestions. First, I changed the res to 0.6, and it said "no elbow found, Rerun with a fixed k or a different range." Then...

Hi, @ckmah . Thanks for your suggestions. I changed the res to 1 afterrunning bt.tl.flux(data, res=1, recompute=True), and I got the following fluxmap. Do I still need to increase the...

Hi, @ckmah . Thanks very much for your kind help. I will write you an E-mail. Best.

Hi, @ckmah . Thanks very much for the reply. The stack trace is shown below --------------------------------------------------------------------------- ValueError Traceback (most recent call last) Cell In[15], line 1 ----> 1 bt.pl.shape_stats(sdata) File...

Hi, @ckmah . Thanks for the prompt reply. I checked my data and found that the cells and nuclei are matched. There are 1000 cells and matched nuclei in my...

Hi, @ckmah . I checked the data and there are no null values or empty strings in the data. 

Hi, @ckmah . Thanks very much for the promp reply. The stack trace is shown below --------------------------------------------------------------------------- ValueError Traceback (most recent call last) Cell In[15], line 1 ----> 1 bt.tl.lp(spatial_data)...