Jolleboll
Jolleboll
Hello, I'd like to add that I've been running GermlineCNVCaller for several days now, on a 256 core machine: ``` singularity exec image/gatk.sif gatk GermlineCNVCaller\ --run-mode COHORT\ --interval-merging-rule OVERLAPPING_ONLY\ etc....
Hello @asmirnov239 @samuelklee and thank you very much for replying so quickly! It just finished minutes ago, it took six days. As you suspected, I did not split the intervals...
I think maybe it is related to whether there are batches in the batch table file that have no samples in the sample table file.
Most excellent big thanks! Have a merry weekend :-]
Uuuuhmmm I just realised this confuses my plans. I was hoping to use pixy to find IBDs, stretches of DNA where some samples are exactly the same (without considering phasing)....
Hello, I also get this error with the latest release (0.4.0). Perhaps it's time for a new release? :P I fetched the latest commit (dd35b85e3bd0f6c58f6e76ec9e5a47ab0e98987c) and the error is fixed....