JC Rop

rm.terms not working for factor with several categories when used together with show.reflvl = TRUE

2

``` r library(glmmTMB) #> Warning: package 'glmmTMB' was built under R version 3.6.3 library(sjPlot) #> Warning: package 'sjPlot' was built under R version 3.6.3 data("Salamanders") model

Including total on the set labels

1

Is it possible to include the total count next to the set labels? Thanks.

SCTransform example in vignette not working

1

**Describe the bug** I'm trying to replicate the example in the vignette to use SCT internally within scdblFinder but I get the error below > Error in if (length(sel_features) >...

graph2ppt connection error when exporting Seurat FeaturePlot in R 4.2 Rmarkdown

3

Dear developer, Many thanks for the great tool! Very handy. I'll be grateful for your assistance with the issue below. I updated my rstudio to the latest version and R...

Installation of clusterexperiment fails on 3.14 (BiocManager 1.30.17), R 4.1.3 (2022-03-10) MacOS

1

I am experiencing a similar issue as this .When I try to install clusterExperiment on macOS it errors out as follows ```r BiocManager::install("clusterExperiment") ``` 'getOption("repos")' replaces Bioconductor standard repositories, see...

Many thanks for the very helpful package. Is it possible to upgrade the compatibility requirement for bokeh from bokeh-1.4.0 to bokeh-2.4.2?

Error in interactive R session on HPC that does not come up when running in rstudio server on the same HPC setup

2

Dear developers, Thank you very much for the very useful package for large datasets. I'm able to use it smoothly through rstudio server on the HPC but I want to...