Yashvardhan Jain comments

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                                            Yashvardhan Jain

Ensure widget works in Jupyter running in VSCode

I’m having issues when trying to render a vitessce widget in VSCode Jupyter notebook (connected via jupyter-ssh to a remote server). The notebook is being rendered on the remote server...

Ensure widget works in Jupyter running in VSCode

Hi @keller-mark , looks like this is not vscode specific. I just downloaded the notebook and the data to my local system (Windows) and get the same issue. Maybe the...

Ensure widget works in Jupyter running in VSCode

Hi @keller-mark , I did a bit more debugging and to make sure its not my code that's an issue, I tried recreating the code notebook (in VSCode Jupyter notebook...

Ensure widget works in Jupyter running in VSCode

It works when I access the notebook via web browser and use `vc.display(proxy=True, host_name="http://localhost:8089")`. For some reason, `vc.widget(proxy=True)` doesn't work. While the image was able to load, I still got...

ValueError: data too large for non-BigTIFF file

Got it @keller-mark. I didn't try it but assume rgb_img_to_ome_tiff() would have a similar issue. I'll work with downscaled images in the meantime!

ValueError: data too large for non-BigTIFF file

Thanks @keller-mark. This works!

Support a link or edge data type for visualizing distances such as from cell to nearest vessel

Hey @keller-mark, are there any updates on this issue? As a temporary "hack", is it possible to use something like a combination of obsPoints/obsSpots (which can define the cells) with...

Minimal example for obsSegmentations.json for visualizing polygons in Spatial View

Awesome! That worked. Thanks for the quick response! On a separate note, is it also possible to set the color of the polygons to a specific color?