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                                            Hesham Amin

If I have phyloseq file instead of example data how I show start

Hi, I ended using another package (microbial) they also have lefse analysis called "ldamarker" ldamarker(physeq, group, pvalue = 0.05, normalize = TRUE, method = "relative") # Here is the code...

ancombc2 output fmt length exceeds maximal format length 8192

Thanks for your answer. Is there is way, hopefully a code I can use it with the phyloseq object I have to fix this problem ?