hanoriega
hanoriega
Hello, I have been trying to recreate other oligomers, with an example of the code below: python .\scripts\run_inference.py --config-name=symmetry inference.symmetry="C4" inference.num_designs=1 inference.output_prefix="example_outputs/C4_oligo" "potentials.guiding_potentials=['type:olig_contacts,weight_intra:1,weight_inter:0.1']" potentials.olig_intra_all=True potentials.olig_inter_all=True potentials.guide_scale=2.0 potentials.guide_decay="quadratic" "contigmap.contigs=[660-660]" Why does...
python .\scripts\run_inference.py inference.output_prefix=example_outputs/design_01 inference.input_pdb=C:\Users\myuser\RFdiffusion\examples\input_pdbs\design_01.pdb "contigmap.contigs=[A1-6\16-16\A23-32\12-12\A45-48\12-12\A61-601]" inference.num_designs=10 Hello, the above is a backbone I am trying to recreate, to make the n-terminal more hydrophobic. I want to keep certain motifs, and...
Thank you for this software. I have been using motif scaffolding and binder design. However, my main focus is to create n-terminals that would potentially package more kb preferably >5kb,...
Hello, I am trying to do the fold conditioning example. I was able to trouble shoot the first example with the adj and ss pt files. But it mentions (although...
Hello, Thank you for creating this wonderful software; I foresee great success! I am trying to run a simple unconditional monomer from my PDB file using the README.md tutorials. So...
 Hello, The image above shows a test file and an open option. I have built a multilabel model and have a test set that I would like to run...