IndexError: list index out of range Set the environment variable HYDRA_FULL_ERROR=1 for a complete stack trace.

[Hanoriega]

Hello,

I am trying to do the fold conditioning example. I was able to trouble shoot the first example with the adj and ss pt files. But it mentions (although not necessary) you should also generate these files and then gives a script:

./scripts/run_inference.py inference.output_prefix=./scaffold_conditioned_test/test scaffoldguided.scaffoldguided=True scaffoldguided.target_pdb=False scaffoldguided.scaffold_dir=./examples/ppi_scaffolds_subset

I made the necessary changes for Windows: python .\scripts\run_inference.py inference.output_prefix=.\scaffold_conditioned_test\test scaffoldguided.scaffoldguided=True scaffoldguided.target_pdb=False scaffoldguided.scaffold_dir=.\examples\ppi_scaffolds_subset

BUT it keeps giving me this indexerror?

Error executing job with overrides: ['inference.output_prefix=.\scaffold_conditioned_test\test', 'scaffoldguided.scaffoldguided=True', 'scaffoldguided.target_pdb=False', 'scaffoldguided.scaffold_dir=.\examples\ppi_scaffolds_subset'] Traceback (most recent call last): File "C:\User\mydir\RFdiffusion\scripts\run_inference.py", line 84, in main x_init, seq_init = sampler.sample_init() File "c:\users\mydir\rfdiffusion\rfdiffusion\inference\model_runners.py", line 776, in sample_init self.L, self.ss, self.adj = self.blockadjacency.get_scaffold() File "c:\users\mydir\rfdiffusion\rfdiffusion\inference\utils.py", line 891, in get_scaffold item = random.choice(self.scaffold_list) File "C:\Users\mydir.conda\envs\SE3nv\lib\random.py", line 346, in choice return seq[self._randbelow(len(seq))] IndexError: list index out of range

Set the environment variable HYDRA_FULL_ERROR=1 for a complete stack trace.

I am relatively new to coding, can someone help me to correct? Should I add something to the utils.py or random.py?

thanks, Heather

[Hanoriega]

bumping as I still need help?