GuidoLeoni

how to extract basismap and coefmap

1

Dear developers I'm dealing with a dataset of 1603 genes X 16 samples. NMF produces nice output and it is able to identify 3 clusters of samples. In which way...

In case this may be of help the log file tells me that almost all the somatic variants were removed because not in het in the panel of normal ....

Question about rnaseq data

1

Is it possible to utilize your tool for the detection of TCRb in bulk tumor rnaseq data(ie without enrichment of tcrs)? In case, do you think that it is necessary...

mouse CT26 samples with strange copy number

3

This is my first analysis and I ran FACETS on CT26 mouse tumors and Normal tissues (taken from literature). I obtain strange results because all the segments seems to be...