Coco

Hi, When I run the velocyto to convert the bam file to loom file. I met error as: no BGZF EOF marker; file may be truncated. Is it means the...

Error when convert H5ad to seurat object

7

HI, I want to convert h5ad to seurat object by seuratdisk. **But even using tutorial data , i met errors:** Error in dfile$obj_copy_from(src_loc = source, src_name = "obs", dst_name =...

Hi, Thanks for making this amazing tool to visualize the bigwig file! And here I share my Error experience when I used this package: **Error in `combine_vars()`: ! Faceting variables...

Error in .Call.graphics(C_palette, value) : invalid graphics state >

2

Hi Sqjin, I am doing comparison of multiple cellchat dataset. For each, i finished running to cellchat

How to add CARD result to Seurat object

2

Hi developer, Thanks for developing such amazing package for ST analysis. After deconvolution by CARD, how to add the results of CARD object to Seurat data for downstream analysis ?...

Multiple slices

1

Hi, I have multiple slices from 6 patients. For ST data, I divided them into 3 groups (2 sample for each group). And I also integrate scRNA-seq by groups. For...

HI Mkarikom, I wonder whether RsoptSC can applied on Seurat object?

Dear Wang, Thank you for making such useful tool for cell cell signaling interaction. I want to ask whether soptSC can be used on seurat object by R? Best.