Coco

Results 11 comments of Coco

Error in checkSlotAssignment(object, name, value)

> Error in checkSlotAssignment(object, name, value) : assignment of an object of class “expression” is not valid for slot ‘defineComponent’ in an object of class “FLXMRglmC”; is(value, "expressionOrfunction") is not...

no BGZF EOF marker; file may be truncated

Hi guys, how do you solve the matter about the no EOF marker ; file may be truncated? I deleted the old files but it didnt work. Best

velocyto run OSError: no BGZF EOF marker; file may be truncated

> Hi did you find a solution about this matter?

error that occurred when I ran velocyto on bam files

> Hi guys, > > I'm running velocyto on bam files via ssh. One sample was succeeded, but when I started running the other two samples, I saw this error...

Errors when converting HCA h5ad file into h5seurat file

> Hi! I met this error when I try to convert a h5ad file in 1.6G size to h5seurat. It seems something wrong with hdf5. But when I used the...

Error: Cannot find feature names dataset at row_attrs/Gene

> Hi ,I met the same problem. Did you know how to solve it? Best.

Support for AnnData/H5AD files

Hi , I want to used convert function to convert h5ad to seurat. But I met the following error: Error in self$write_low_level(value, file_space = self_space_id, mem_space = mem_space_id, : Number...

Error in if (abs(max.ES) > abs(min.ES)) { : missing value where TRUE/FALSE needed

> Dear all, > > I am a newbie to bioinformatics, and am running into the same issue when doing GSEA as described in this tread. Now and then I...

How to add CARD result to Seurat object

Thanks for your patient reply. Which data from the CARD object should be extracted to make the matrix of predictions.assay?

Error in as.igraph.vs(graph, from) : Invalid vertex names

> Hi, > > Can you please help me understand what is required for `get_tf_network`? I don't understand why there would be an issue plotting if there are plenty of...