GSgen

error with vg mpmap

6

Hello, I have made `pggb` graphs for individual chromosomes and used the following steps to run `vg mpmap`: ``` vg convert -g smooth.gfa -p > ch01.pg #all steps for all...

vg mpmap crash

6

Hello, I am using `vg mpmap` as: ``` vg rna -p -n chr01.gtf smooth.gfa > test.gfa vg view -F -v test.gfa > output.vg vg mod -X 256 output.vg > output_1.vg...

vg rna crashed

5

Hello, I am using `vg rna` as: ``` vg convert -g smooth.gfa -p > out.pg #creating gbwt vg gbwt -p -G /smooth.gfa \ -o out.gbwt \ -g out.gg #creating spliced...

Hello, I created a `graph genome` for individual gene of interest. Now I want to create a spliced graph to create a pan transcriptome to ultimately use it for `vg...

vg rna error

1

Hello, I have made pggb graph for a gene and I am trying to run `vg rna` using: ``` vg convert -g smooth.gfa -p > example.pg vg index example.pg -x...

vgtools deconstruct same ID for several structural variations

2

Hello, I am using vgtools deconstruct as: ``` vg convert -g smooth.gfa -p > out.pg vg index out.pg -x out.xg vg snarls out.xg > out.snarls vg deconstruct out.xg -r out.snarls...