Emily Thomas

Hi! Thank you for your package. I've been trying to run bridge integration from (https://www.biorxiv.org/content/10.1101/2022.02.24.481684v1.full) following the [vignette](https://satijalab.org/seurat/articles/bridge_integration_vignette.html) and issue (#5697). However, I keep running into a problem in ```PrepareBridgeReference```...

Overlay custom shape onto cell boundaries from Xenium

2

Hi, This may be a question for SOPA but I thought it was also worth asking here as well please. I have custom polygon segmentation for a particular cell type...

Different cell ids selected in regions: spatialdata vs Xenium explorer

4

Hi, Thank you for the help with the polygons previously. We're trying to investigate some polygons of interest but we get different cells selected when we investigate the same regions...

Overlay custom segmentation using cell segmentation resolver

12

Hi, Thank you for SOPA, it looks really helpful. I'd love to use the cell segmentation resolver. However, I'm struggling a little with how best to implement. I have custom...