Emily Thomas
Emily Thomas
Thank you so much for getting back to me. I ended up initially using the GeoPandas [overlay](https://geopandas.org/en/stable/docs/user_guide/set_operations.html) function but also asked SOPA the same question and he's very kindly implemented...
Thank you, I've given it a try but I keep getting "only integer scalar arrays can be converted to a scalar index". I've had to do `.table` as it wasn't...
It's happy if I plot the cells in the whole data: where diff is a list of cell ids ``` for i in diff: sdata.table.obs.loc[sdata.table.obs["cell_id"] == i, "new_region"] = "0"...
Hi, Thank you so much for getting back. That's really great to hear! 1. Yes, I was hoping it would be one segmentation. I have both objects as shapes in...
Thank you so much, that would be brilliant if possible!
Hi, I managed to do a quick workaround for now using (leaves small artefact cells - was going to try and merge with cell with closest nuclei centroid later) ```...
Thank you so much! That's fantastic, esp. the updating transcripts in only new cells! I'll try it out tomorrow. You were totally right about Multipolygons, ended up using geopandas explode...
Sorry for the delay in getting back, thank you a lot for all your help with this!
Hi, I actually ended up using a slightly different segmentation in the end, to fill in the gaps around the custom cells, but used your aggregator to compile the table....
I think I used the aligned one from here: https://github.com/CalayZhou/Multispectral-Pedestrian-Detection-Resource