DC
DC
While I am trying step by step to process my ATAC Seq data, I am stuck in the step of CreateNetwork. The ouput file I got are lists of {motif}_path_edges.txt...
I have no idea why I got all zero in assemble-complexSVs.... Inside my breaks.sv.txt file would be like this.. chr15 chr2 -+ 35700000 216100000 translocation chr1 chr15 +- 109750000 101140000...
I have adjusted the CNV using calculate-cnv, segment-cnv, and correct-cnv. After that, I was trying to see in the triangular plot of the cool file at the same region. Basically,...
I have trouble using preseq lc_extrap command, basically, it tells me my bam file is unsorted. However, I sorted the bam file and then reran it. The same error came...
by the follwing command, the figure I generate has no z-score. wonder how to calculate the z-score or something I miss? eg. mustache -f A.hic -r 500kb -pt 0.1 -st...
> library(devtools) install_github("guokai8/scGSVA") Loading required package: usethis Downloading GitHub repo guokai8/scGSVA@HEAD Error in utils::download.file(url, path, method = method, quiet = quiet, : download from 'https://api.github.com/repos/guokai8/scGSVA/tarball/HEAD' failed