DC

Error in get("GO2ONT", envir = GO_DATA) : object 'GO2ONT' not found > packageVersion('org.Hs.eg.db') [1] ‘3.15.0’ > packageVersion('clusterProfiler') [1] ‘4.4.4’

from the result of CreatNetwork, each individual of ${TF}_path_edges.txt was generated. When I open each of them, it contains "Source" "Target" and "Level". Is it common to have only level...

is there any way to adjust the cut-off of the l2fc? I have been trying the --pesudo option, but it doesn't change

same error here Error in get("GO2ONT", envir = GO_DATA) : object 'GO2ONT' not found > packageVersion('org.Hs.eg.db') [1] ‘3.15.0’ > packageVersion('clusterProfiler') [1] ‘4.4.4’

> I had exactly the same issue; I was using Micro-C, so also MNase digested, and ran into exact same error message at 10kb. > > Processed the data at...

just updated and tried again. In the segment-cnv 90mb-115mb region should be losing one copy. I have compared --mad-max 0 with cnv adjustment and without cnv adjustment. They look the...

diff_mustache.py [-h] [-f1 F_PATH1] [-f2 F_PATH2] [-d DISTFILTER] -o OUTDIR -r RESOLUTION [-bed1 BED1] [-m1 MAT1] [-b1 BIASFILE1] [-bed2 BED2] [-m2 MAT2] [-b2 BIASFILE2] [-cz CHRSIZE_FILE] [-norm NORM_METHOD] [-st ST]...