Dillon Brownell

General question about use case

1

Hello Harmony team, I have a single cell RNA dataset with samples from 8 different tissues. The trouble I'm having is that some of these tissues were digested enzymatically, and...

Some questions about best practices

1

Hello Tangram developers, I'd like to ask a question that might help me clarify whether Tangram is a good choice for my large visium dataset. So, it seems to me...

Performing CSIDE across samples of various conditions

3

Hi @dmcable, I have a question about the solution you posted to the issue I had (#134). I checked out the vignette you linked and, while I think the functionality...

Interpretibility of adata.uns['spatial_interaction']

1

Hello Scimap devs, I have a question regarding scimap results obtained after running sm.pl.spatial_interaction. The results are confusing to me. I see some instances where z scores which should by...

Cell2location workflow, normalized for abundance?

1

Hello ncem devs, I have a question about how to use cell2location celltype-specific counts (generated by the compute_expected_per_cell_type method) for NCEM. I know there is a workflow available, but I...