DiegoSafian
DiegoSafian
Hi, I do not have an issue. Instead, I have a question about how funannotate predict uses --stringtie gtf in gene prediction. I have RNA-seq data from several tissues and...
**Are you using the latest release?** yes **Describe the bug** I have been running several funannotate update jobs in parallel and I get an error in earlier steps. It is...
**Are you using the latest release?** funannotate v1.8.13 **Describe the bug** Training Augustus using BUSCO gene models showed an error, which seems to be related with the AUGUSTUS_CONFIG_PATH **What command...
**Are you using the latest release?** yes **Describe the bug** The training with Augustus is failing because UnboundLocalError: local variable 'AUGUSTUS_BASE' referenced before assignment **What command did you issue?** funannotate...
Hi, I am trying to assemble a genome of a fish species using nanopore long-reads and Illumina reads (300 pb), but I am getting constantly an error that seems to...
Hi, I am writing because I want to phase a genome that I assembled using nanopore long reads and then I used HiC data to scaffold chromosomes. I was wondering...
Hi, After successfully using gff3_QC, gff3_fix is giving me the following error: ``` (genometools) [safiand@login001 grass]$ gff3_fix -qc_r test.txt -g turneri_annotation.gff3 -og new_corrected.gff3 INFO Checking QC report file (test.txt)... INFO...
Hi, I am running version 4.1 in command line and I am getting all the output, except for top_genes. Do you know if there is something I can do to...
HI, I was wondering if there is an advisable way to incorporate the usage result into a Seurat object (ideally V5), so that one can calculate the usage of GEP...
Hi, I had the attached error. Could you please take a look and see if you can detect the problem?? Kind regards, Diego [pere.txt](https://github.com/cschin/peregrine-2021/files/14232466/pere.txt)