Delong Zhou
Delong Zhou
Hello, I'm trying to follow the tutorial with Allen Brain Atlas and I have encountered an issue. Following section "Automatically save the plots of the all inferred network for quick...
Hello, I'm trying to understand how "top" works, or which ranking system is used, for the functions netVisual_circle and netVisual_diffInteraction. Is it based on the weight, the p value, or...
Hello Sam, As part of my differential connectivity experiment I'm shuffling cell condition label and remaking the TOM for the FDR. Despite I'm setting random seed for each iteration, shuffling...
**Describe the bug** I believe the function ConstructNetwork creates temporary .rda files in the cwd of R instead of saving to the path provided for the tom files. I was...
Hi Sam, I'd like seek your input on my understanding of the kME and how I'd like to use it for condition-wise comparison As stated in my other postes, I'm...
Hi Sam, It seems that the Enrichr table is only filtered based on the enrich score. Would it be possible to filter by the adjusted p-val first? For example only...
Hi Sam, I wonder if there is a way to export the networks to Metascape so I can annotate the network with other information like protein-protein interaction or gene ontology...
Hello, I'm a bit confused about how color is used in the volcano plots vs in PlotKMEs and other plots In some of my volcano plots all the modules retain...
Hello, Is there a way to evaluate how stable the modules are? In the projection section you discussed how modules created from one set may not apply to another set....
Hi, I find the information flow chat sometimes is using the wrong color for the legend (to indicate which condition has stronger communication) The code I'm using: `rankNet(cellchat, mode =...