Delong Zhou

> @DelongZHOU This is unexpected. Can you check the order of the two datasets in the object via `names(methods::slot(cellchat, "netP"))` > > The codes below will return the data gg

I checked the link today and it's not working. I also tried web archive, unfortunately all the snapshots are from when the website is down. Reading briefly from the paper...

Same. The memory consumption seems to grow linear as the number of loops. I'm limiting my script to 1 thread but it still consumes all the memory.. Edit: by using...

Hi, Sorry I meant EnrichrBarPlot and EnrichrDotPlot, since both pick the top term(s) for plotting. For the enrichment with background indeed we seem to fall onto the same issues. I...

Hi, I found some packages from this tutorial that provides GeneOntology, Reactome, KEGG and other enrichment analysis. Each enrichment analysis has its own package and the syntax is pretty much...

Just realized that I forgot the link: https://yulab-smu.top/biomedical-knowledge-mining-book/index.html And my code to use the packages for Reactome and Gene Ontology are as the following: ``` library(tidyverse) library(DOSE) library(clusterProfiler) library(ReactomePA) #load...

Hi, I can't remember exactly but it's something like ***block***.rda and ***consensus***.rda From what I remembered in my error messages the consensus file is eventually saved as the tom file...

Hi Sam, I'm re-opening this issue. The temp tom file is now named "individualTOM-Set1-Block1.RData" so it starts to crash between my jobs again. Best, Delong

My code is similar, only difference is without tom_outdir: > seurat_obj

Hi Sam, I'm monitoring the temp file, and I found that in the TOM folder there is indeed a temp file named _block.1.rda, but in addition to that, in the...