GearNet

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Why is the batch size for downstream tasks set to 2? I can run it with a batch size of 128 or more, and setting it to 2 makes the...

minjiecheng

Hi, Thank you for your interesting and valuable work! I have a question regarding the configuration settings in the 'yml' file for 'species_start: 0' to 'species_end: 22' in the 'alphafolddb_v2'...

minjiecheng

How to pass the protein pdb file to the released model weight: (mc_gearnet_edge.pth)

1

Hi author, Right now I download the pretrain weight from [Multiview Contrast](https://zenodo.org/record/7593637/files/mc_gearnet_edge.pth). I want to load this weight, and then pass a pdb file to the model. In this case,...

Tizzzzy

Hi, For the provided pretrain model weight: [Multiview Contrast](https://zenodo.org/record/7593637/files/mc_gearnet_edge.pth), [Residue Type Prediction](https://zenodo.org/record/7593637/files/attr_gearnet_edge.pth), [Distance Prediction](https://zenodo.org/record/7593637/files/distance_gearnet_edge.pth), [Angle Prediction](https://zenodo.org/record/7593637/files/angle_gearnet_edge.pth) and [Dihedral Prediction](https://zenodo.org/record/7593637/files/dihedral_gearnet_edge.pth). Is it possible to check the representation of a 3D structure...

Tizzzzy

[Docs] Documentation representation for GearNet

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In this change I have generated a diagram representation of the GearNet codebase. You can see how it renders here: https://github.com/CodeBoarding/GeneratedOnBoardings/blob/main/GearNet/on_boarding.md A lot of scientists and researchers are looking at...

ivanmilevtues