Davide Bressan

icon indicating a website link https://davidebrex.github.io/

icon company University of Trento icon location Trento - Italy icon location Postdoc researcher, Bioinformatician - University of Trento (ITA)

Results 8 comments of Davide Bressan

Custom genome use isn't clear

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Q: How to incorporate ChIP-seq spike in normalisation into peak calling?

> @annsophiegironne, > > ecoli is my spike-in. I aligned my reads to each genome individually. ecoli_filterdup.bed was the output from running macs2 filterdup. Hi, thank you for providing the...

No gene can be mapped when using enrichKEGG

Same problem, but if I use `enrichMKEGG` it works. What is the difference between the two functions?

No gene can be mapped when using enrichKEGG

> @DavideBrex Please make sure you are using the latest version of clusterProfiler and please provide your sessioninfo. I am using last version. Thank you for the support. ``` R...

Workflow defines configfile config/config.yml but it is not present or accessible.

I have the same problem

Problems with custome genomes

Hi Giulia, I am not the developer but I noticed that at the end of the error message there is `IsADirectoryError: [Errno 21] Is a directory:`. Could you share the...

Problems with custome genomes

I believe the error is in line 337 ([here](https://github.com/biocore-ntnu/epic2/blob/0b719990672943d35b30da74274d1841e0955dd0/epic2/src/find_islands.pyx#L337)) when the program tries to open the connection to the output file but instead receives a folder. Try to provide as...

Music2 bug in "music2_prop_t_statistics" function

Found same problem, still not resolved