Anan Ibrahim

icon company Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie - HKI icon location Jena, Germany icon location A bioinformatician that currently delves in research software engineering and data science for NGS.

Results 6 comments of Anan Ibrahim

Mention AMPcombi and DRAMP database in usage.md

I would also suggest that for the taxonomc classification we recommend the usage of GTDB due to its vast and curated taxonomic database. But for that the user needs more...

Add nf-test skeleton

Thank you @jfy133 !! Now lets get this done 💯

Adapt deepBGC to use GPUs

@jfy133 i was told once that we can assign a single process in the pipeline to use GPUs, in the configuration file somewhere here ``` process { withLabel:process_low { cpus...

AMP seq identified as non-amp

Hi @mark0428 Thanks for your reply. Yes, some sequences were predicted in silico from other tools as potentially putative AMPs, and one of them validated in the lab. Best, Anan

Add support for generating mmseqs taxonomy reports

Visualization is always a nice add on feature 💥 We already use `createtsv` and publish the output table for mmseqs taxonomy classification. So creating this module should not be an...

A uniform input for all tools in each screening workflow

This feature is also referred to in issue #179. Just to keep track of our issues ;)