Add support for generating mmseqs taxonomy reports

Open amizeranschi opened this issue 10 months ago • 2 comments

Description of feature

Mmseqs has built-in support for generating some useful reports via the mmseqs taxonomyreport command. This is described in the official wiki: https://github.com/soedinglab/mmseqs2/wiki#taxonomy-report-in-kraken-or-krona-style

It would be great to have this functionally enabled in nf-core/funcscan. It would require the creation of an additional nf-core module called MMSEQS_TAXONOMYREPORT.

Mar 21 '25 16:03 amizeranschi

What do you think @jasmezz @Darcy220606 ?

Mar 23 '25 12:03 jfy133

Visualization is always a nice add on feature 💥 We already use createtsv and publish the output table for mmseqs taxonomy classification. So creating this module should not be an issue if this is requested. Could also be integrated in the GUI downstream...

Mar 25 '25 08:03 Darcy220606