Ming Chen

icon indicating an email [email protected]

icon company Sun Yat-Sen University icon location Gungzhou, China icon location I am a student in SUN YAN-SEN university （中山大学）@sysu, I am eager to learn on GitHub and contribute my part to this community.

Results 3 issues of Ming Chen

How can I plot all the contigs？

My query have at least 100 contigs，So What I should set the parameter to plot all the contigs easily？ ```shell mummer-idotplot 24771.mum 24771.html --refs all --querys all ``` like this?...

TypeError: filename expected str, os.PathLike or fsspec.OpenFile, got: u'/data/cm/soapswga/gemomes/cpar_genome.fasta'

9 comment

Hi, I used the code recently : ```swga filter --min_size 6 --max_size 12 --min_fg_bind 1000 --max_bg_bind 500000 --min_tm 18 --max_tm 32 --max_gini 0.6``` And the log is: ``` /data/cm/software/miniconda3/envs/py27/lib/python2.7/site-packages/argutils/read.py:25: YAMLLoadWarning:...

Error in if (class(dis) %in% "phylo") { : the condition has length > 1

1 comment

**My Code:** ``` # Merge seq and tree OTU otu_tree Phylogenetic tree with 17 tips and 15 internal nodes. Tip labels: Amblychaeturichthys_hexanema, Chaeturichthys_stigmatias, Ctenotrypauchen_chinensis, Odontamblyopus_lacepedii, Hexagrammos_otakii, Pholis_fangi, ... Unrooted; includes...

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