Ming Chen

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icon company Sun Yat-Sen University icon location Gungzhou, China icon location I am a student in SUN YAN-SEN university （中山大学）@sysu, I am eager to learn on GitHub and contribute my part to this community.

Results 5 comments of Ming Chen

TypeError: filename expected str, os.PathLike or fsspec.OpenFile, got: u'/data/cm/soapswga/gemomes/cpar_genome.fasta'

> I am having the exact same problem: (swga) tron:~/SWGA_FOLDER $ swga filter swga filter, v0.4.4 > > * max_gini: 0.6 > * min_tm: 15.0 > * max_primers: 200 >...

TypeError: filename expected str, os.PathLike or fsspec.OpenFile, got: u'/data/cm/soapswga/gemomes/cpar_genome.fasta'

> I am having the exact same problem: (swga) tron:~/SWGA_FOLDER $ swga filter swga filter, v0.4.4 > > * max_gini: 0.6 > * min_tm: 15.0 > * max_primers: 200 >...

TypeError: filename expected str, os.PathLike or fsspec.OpenFile, got: u'/data/cm/soapswga/gemomes/cpar_genome.fasta'

Thanks，I have used this program，the parameters in this program seems a little different from swga2. What's more, I used swga2 to filter the best primers sets, the results looks strange:...

TypeError: filename expected str, os.PathLike or fsspec.OpenFile, got: u'/data/cm/soapswga/gemomes/cpar_genome.fasta'

> there are several example files on the github site at https://github.com/songlab-cal/swga2/tree/master/examples Let me know if these help > […](#) > On Thu, Sep 15, 2022 at 8:50 AM Ming...

TypeError: filename expected str, os.PathLike or fsspec.OpenFile, got: u'/data/cm/soapswga/gemomes/cpar_genome.fasta'

> Thanks a lot!👍That is save my much time. But the pyfaidx version of 0.4.5.4 isn't exist. I found the oldest version of pyfaidx is 0.4.6 due to this **ERROR**:...