CellProfiler-Analyst
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CellProfiler
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
Would be a nice feature which has been requested a few times. The reduction tool currently colours by class, but allowing other metadata to be used should be possible.
Can be tested with the Translocation tutorial. Looks like we need better handling for when saved thumbnails are a mix of colour and greyscale images.
I recall that that there is a technical reason why it currently is only supported on the dimensionality reduction plot but could not find in 5-10 minutes searching here plus...
We currently have 5 or more systems for generating sql queries, it's a bit silly. SQLAlchemy from #302 might make this a lot easier to resolve, since we could use...
Moving away from sqlite/mysqlclient would help to unify a lot of the functionality and could also open up a pathway to supporting other database types. More importantly, pandas `to_sql` can...
Perhaps someone will take this up in the future if development time is available. The current implementation of "Score All" is somewhat hacked together. As it stands creating a per-object...
Having spent an inordinate amount of time trying to get PCA to run on an M1 Mac Mini running Big Sur, I thrilled to say that it actually can be...
Not sure how to solve this just yet. Currently the PCA table is regenerated each time you run reduction, and changing methods produces different features. If a user defines gates...
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Open-source software for exploring and analyzing large, high-dimensional image-derived data.