CellProfiler-Analyst
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Dimensionality Reduction plot gates will stop working if the reduction method has been changed.
Not sure how to solve this just yet. Currently the PCA table is regenerated each time you run reduction, and changing methods produces different features. If a user defines gates and then generates a PCA table with different features then those gates will stop working. Perhaps we can find a way to add new features to the PCA table if it already exists.
This isn't really a major issue, but for now it's a caveat worth noting.