Carlos Borroto

Seems like `+00:00` is breaking the parsing of the time RG tag. Not sure if `+` is allowed here, I would assume it is. ``` $ goleft indexcov --directory goleft_output/...

Not much to say about this one. I'm guessing one of the input JSONs is misformatted. ``` vagrant@rabix:~/rabix/examples$ rabix -v -i https://s3.amazonaws.com/rabix/rabix-test/inputs-workflow-remote.json https://s3.amazonaws.com/rabix/rabix-test/bwa-mem-workflow.json Document must have a 'class' field ```

bwa-men documentation example broken

1

The documentation example fails with this error: ``` vagrant@rabix:~/rabix/examples$ rabix https://s3.amazonaws.com/rabix/rabix-test/bwa-mem.json -- --reads test-data/example_human_Illumina.pe_1.fastq --reads test-data/example_human_Illumina.pe_2.fastq --reference test-data/chr20.fa [E::bwa_idx_load] fail to locate the index files Tool failed: ``` Looking into...

walk_together and multiple records with the same position

5

Hi, thanks for putting together such a wonderful library. Could you please take a look into this issue?. From [VCF spec](http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41): > POS position: The reference position, with the 1st...