Carlos Borroto

Found the forum entry looking for a solution for mounting a docker volumen. In my case I would like to run Ensembl VEP with Cromwell/WDL. Using VEP in cache/offline mode...

Can't say if it is related but in OS X 10.9.1, Python 2.7.5 Cython 0.20.1, virtualenv 1.10.1 and pip 1.5.2, I get this error: ``` $ pip install --upgrade pyvcf...

Works for me too!. Thanks.

Hi James, I haven't actually implemented this yet. I'm getting familiar with the walk_together algorithm and wanted to know if this is something you might consider for inclusion. I believe...

Forgot to mention, I think the key function should already work if you consider as uniques two lines for the same position with different mutations. My application does not.

I see. It doesn't matter for the difference operation, I don't know about union and intersection. I haven't thought about it yet. For the difference. {r1, r1, r2} \ {r1,...

Hi @holtgrewe, I'm looking into this issue with @lshimp. Thanks for the response. We are familiar with the `vt` normalization, although I'm not sure this is playing a role here....

Much appreciated. I didn't say, but we opted to build the database instead of downloading the ones provided. Nothing crazy, we are using all the refseq files you would expect....

I might be getting something wrong, but I don't think `bcftools norm`/`vt` normalization do 3' shifting. They do left-aligning to the reference forward strand, which translates into "5' shifting" in...