CampingOnSeabed

All_genes_to_check_plot

> LoadH5ADobs("E:\\Desktop\\BPCells\\humanbrain/modified_data_withanno_100k_cells.h5ad") Error in H5Fopen(file, flags = flags, fapl = fapl, native = native) : HDF5. File accessibility. Unable to open file.

Hi everyone, I recently do my scRNA-seq analysis, and realized SCENIC such a great tool. I'm particularly interested in reproducing Figure 1b from the paper "SCENIC: single - cell regulatory...

热图报错！

6

您好这是我的代码。 monocle3_genes % filter(q_value < 1e-3 & morans_I >0.19) ) mat

What do the (+) and (-) represent respectively?

1

hello friends, I recently used pyscenic for analysis. after the rgular analysis procedure, I found that there is (+) and (-) for the same regulon, like this. What do the...

WARNING: infer_data failed for target HSPA13' Retry (1/10). Failure caused by AttributeError("'csc_matrix' object has no attribute 'A'").

3

**Describe the bug** I'm trying to run pyscenic on the HPC, but I'm encountering the following error: **Steps to reproduce the behavior** I used pbs to submit the sh. the...

Monocl3 BUG！Error in plot_genes_in_pseudotime(cds[genes_sig, ], color_cells_by = "celltype", : unused argument(color_cells_by = "celltype")

1

genes_sig % top_n(n=10, morans_I) %>% pull(gene_short_name) %>% as.character() plot_genes_in_pseudotime(cds[genes_sig,], color_cells_by="celltype", min_expr=0.5, ncol = 2) Monocl3 BUG！Error in plot_genes_in_pseudotime(cds[genes_sig, ], color_cells_by = "celltype", : unused argument(color_cells_by = "celltype")

### Description of the bug Hi friends, I encountered a error(Workflow `RNASEQ` declares 18 input channels but 0 were given) when I was using nf-core/rnaseq on hpc. The code, other...

### Description of the bug Hi nf-core team! I am using nf-core/rnaseq pipelines recently, but I encountered a bug. I am trying wo run pipeline on HPC, so I downloaded...