Kevin Cai

[BUG]from pyscenic.rnkdb import FeatherRankingDatabase as RankingDatabase

5

**Describe the bug** Package doesnt have this modle ModuleNotFoundError: No module named 'pyscenic.rnkdb'

[BUG]running the "Full pipeline.ipynb"

1

**Describe the bug** DATABASES_GLOB = os.path.join(DATABASE_FOLDER, "mm9-*.mc9nr.feather") db_fnames = glob.glob(DATABASES_GLOB) def name(fname): return os.path.splitext(os.path.basename(fname))[0] dbs = [RankingDatabase(fname=fname, name=name(fname)) for fname in db_fnames] I was running the "Full pipeline.ipynb".But I had...

warning [E::idx_find_and_load] Could not retrieve index file for

9

pairtools parse /cluster/home/Kangwen/Hic/data_new/snHic_index/XY5/snHic_SRR0_tmp/SRR0.qc.bam -c /cluster/home/Kangwen/common/hg38/hg38.fa.chrom.sizes --drop-sam --drop-seq --output-stats SRR0.stats --assembly hg38 --no-flip --add-columns mapq --walks-policy all -o SRR0.pairs.gz --nproc-in 60 --nproc-out 60 [E::idx_find_and_load] Could not retrieve index file for '/cluster/home/Kangwen/Hic/data_new/snHic_index/XY5/snHic_SRR0_tmp/SRR0.qc.bam'...