[BUG]running the "Full pipeline.ipynb"

[CCCKW]

Describe the bug

DATABASES_GLOB = os.path.join(DATABASE_FOLDER, "mm9-*.mc9nr.feather") db_fnames = glob.glob(DATABASES_GLOB) def name(fname): return os.path.splitext(os.path.basename(fname))[0] dbs = [RankingDatabase(fname=fname, name=name(fname)) for fname in db_fnames]

I was running the "Full pipeline.ipynb".But I had some question about how to make the "dbs". The feature file I used was "hg38_10kbp_up_10kbp_down_full_tx_v10_clust.genes_vs_motifs.rankings.feather" But I failed to run the code. I want to ask how to make the "RankingDatabase" and whether the file I used was wrong. Can u help me with the problem?

[ghuls]

Use the command line version instead: https://pyscenic.readthedocs.io/en/latest/installation.html#command-line-interface

The notebook is still from a time before the commandline version existed.