Biomiha

Population percentages different for cyto_plot_gating_scheme vs cyto_plot

16

Hi @DillonHammill, I'm seeing some unusual behavior with the population percentages when I plot a sample with `cyto_plot_gating_scheme` (e.g. 1793%)  Whereas `cyto_plot` plots accurate percentages for the same sample:...

Custom gate track for cyto_plot_gating_scheme

1

Hi Dillon, Would you be willing to support passing a vector of population paths as an argument to the `cyto_plot_gating_scheme` function? I've got a GatingSet parsed in from BD Diva...

Add conditional print method for objects that contain alternative experiments

37

Hi Stefano, I've now made the printing conditional and have amended the `show()` unit test to assure that the default print method works. For the unit test I've added a...

`tidySCE` Functionality to see and access the altExp slot

18

Hi all, I am really liking your package, it has made many operations infinitely easier. We tend to prefer the `tidySingleCellExperiment` to Seurat, however, the one thing we have noticed...

Hi @linqiaozhi The alra.low.memory function has a line checking whether the input A_norm is of class matrix but the output of class(A_norm) is actually a vector with multiple elements e.g....

cyto_plot computed stats look off

1

Hi Dillon, I've noticed that the stats that are plotted with `cyto_plot` don't actually correspond to the stats obtained by `cyto_stats_compute` for the same gates. I've used the prebundled GatingSet...

Error in cyto_gatingTemplate_generate

3

Hi @DillonHammill, I've tried to use the `cyto_gatingTemplate_generate` to export a gating template for a GatingSet imported from FlowJo using CytoML (similar use case to Issue #41 ). I get...