Biomiha

Hi all, I'd also like to add I'm getting the same error running metacell in a Docker container on an AWS instance. I'm using the ensembl gene ids as rownames...

@DillonHammill Yes, the second plot (at the bottom) was made using cyto_plot and it looks like the population percentages are as expected. If you compare the gate percentages in the...

Using `cyto_plot_gating_scheme(x = gs[[1]], back_gate = FALSE, gate_track = TRUE, axes_trans = trans_obj, legend = FALSE)` gives me:  Whereas if I try `cyto_plot` with overlays, I get the following...

Hi @DillonHammill, I keep getting the following error if I specify: `back_gate = TRUE` Error in if (channels[1] == channels[2] | (!.empty(channels[1]) & .empty(channels[2]))) { : missing value where TRUE/FALSE...

Hi @DillonHammill, There's no boolean gate but unfortunately I haven't been able to figure out what is causing the issue. I think it's best if you close the issue for...

@DillonHammill - apologies for the delay. I've sent it to your email address.

Thanks @DillonHammill. I've sent it across to your email.

Yes, exactly. When I tested on a more complicated example I noticed that it creates a new line if the maximum line width is exceeded, but it still prints everything.

Printing the name of the experiment instead, followed by the assayNames and separated by a semi-colon is easy enough. That would look something like: `# A SingleCellExperiment-tibble abstraction: 7,865 ×...

Okay, I've now mocked up the expression matrices for the additional alternative experiments and added that to the unit tests. In my hands it works as expected. Will move on...