Sam W

Medaka variant error: "IndexError: index 0 is out of bounds for axis 0 with size 0"

2

**Describe the bug** A clear and concise description of what the bug is including the command that you have run. `medaka variant` crashes with exit status 20 when the command...

## Bug report ### Expected behavior and actual behavior I am running a pipeline using the k8s executor from inside a k8s pod (I know this isn't generally recommended but...

Support accepting stdin instead of a specific filepath for single ended data

2

A common use I have for hostile is to cleanup and concatenate a directory of fastqs prior to moving them off instrument, if I could do all of this with...

Exitcode being ignored in k8s in some cases

3

## Bug report As the title says ### Expected behavior and actual behavior Currently a process can exit with a non-zero exit code (as stored in the `.exitcode` file) but...