BenoitMorel

Dear Tardigradus, Can you tell me which raxml-ng release (or branch and commit) you are using? Benoit

> So ideally I would want to build PLL as a stand-alone module and then add it as a dependency to the RAxML and ModuleTest modules I also wanted to...

My understanding is that raxml-ng should always be compiled with the exact PLL version it points to. As long as this is respected, I don't see any problem. But then...

I just added a test script https://github.com/BenoitMorel/ParGenes/blob/master/tests/test_custom_raxml_library.sh If you want to test your own raxml-ng-mpi.so, you can do the following: ``` git clone --recursive https://github.com/BenoitMorel/ParGenes.git cd ParGenes ./install_scheduler_only.sh cd tests...

ParGenes is the only program that can run raxml as a library. So the simplest way to test that the error is not thrown is to run the 4 commands...

Hi @giyany, beyond this specific crash, you are right that we have a problem in ParGenes when raxml-ng crashes (for instance an assertion error). In the default mode, it's very...

Hi Olivia, Can you send me the command line that you are using? Are you using the option "--per-family-rates"? Best, Benoit Le mer. 3 janv. 2024 à 22:13, omwa227 ***@***.***>...

In your second message, the logs seem to be ok (I would think that the per-family rates have been estimated). Have you checked the output files? It should be the...

Hi Alessandra, I just gave it a try, because I implemented this a long time ago :-) The checkpoint is automatic, so you're not doing anything wrong. For a given...

Ok. I hope I can work on this in the next two weeks. I'll let you know! Le ven. 11 août 2023 à 23:29, AAleotti ***@***.***> a écrit : >...