BenoitMorel

Hi Alessandra, I have added one level of checkpoint: the current state is saved after each round of SPR moves, which is every time you see this kind of log:...

That's not an ignorant question :-) No, that won't work if you update with conda because the fix is not in bionconda yet. I would rather install generax with git....

Yes exactly! It restarts from a tree with the same likelihood so that looks great :-) Le ven. 25 août 2023, 18:43, AAleotti ***@***.***> a écrit : > Hi Benoit,...

Dear Austin, Regarding the sorting: there is no such feature in ParGenes. How would you expect the sorted trees to be outputted? In one file with all newick trees sorted...

Hey Jigyasa3, I don't understand the difference between "main transfer events" and "all transfer events". Are you interested in the list of newick files in the .rec file or in...

Hi Florent, I finally found the time to look at this :-) I understand the issue, and I am not sure that I can fix it... From what I understand,...

Hi Alessandra, This one looks tricky, we'll have to try different things. The issue seems to happen in a dependency of GeneRax. 1) Could you please run the following command...

Hello Kyle, Thanks for your mail. This should work. Just to be sure, have you tried to see if that works when replacing the Q model with any other model...

Hi Kyle, This won't be easy to fix, because I can't reproduce on my machine (it works fine) :( Can you try the following: in the cloned GeneRax repository, open...

Hi Kyle, I'm updating the conda package with the newest release. It might take a few days before it gets available Benoit Le mar. 9 janv. 2024 à 22:10, Kyle...