AyushSaxena

Hi Ann, Thank you for the quick response. I'm currently using - f349118312919c4fcc448f4595ca3b3a387018e2 - which was the latest version as of last month. The entire point of this exercise, for...

Hi Milot, Thank you once again for the quick follow up. I've conducted a grid search to understand this issue myself, and I have used a kmer size of 10,...

Hi Ann, Thank you for suggesting that. I know that using --cov-mode 3 paired with -c 0.99 is quite strict. When we relaxed it, we were finding 'false positive' clusters,...

Hi Ann, Thank you for guiding me so far. I did a bit of digging around in the temporary files. I'll call the two close sequences with one mismatch between...

Hi Fritz, I apologize for not being specific enough. This is single sample calling in plasmid DNA that has two potential hairpin regions close to each other, producing overlapping deletion...