Alexander Bender

[Feature Request] --read1[from-to] --read2[from-to]

1

Hi @rob-p, would it be possible to add a feature similar to `salmon quant` like `--read-geometry 1[1-end]` (as in Alevin) to define which part of both R1 (and R2) should...

Missing "timeline" info

1

Previously there was an information on when a thread was created by OP and then when last modified. Now, when OP edits it or adds an answer the "creation" time...

Loading VCF using snps.from.file()

1

Hi, I have a problem using the function snps.from.file on a vcf file (motifbreakR V.1.4.0). 1) First of all, library(motifbreakR) misses to load the VariantAnnotation library, hence the readVFC function...

Incorrect documentation / use of thresh.pc argument

2

Hello, in `?identifyOverExpressedGenes()` it says that for `thresh.pc` `Threshold of the percent of cells expressed in one cluster`. However, in the code on multiple occasions such as https://github.com/jinworks/CellChat/blob/main/R/utilities.R#L374 you multiply...

From my (probably wrong) understanding, this should save ROIs number 4 and 5 to RoiSet.zip, no? It saves the first two though. MRE: ```java newImage("Untitled", "16-bit black", 512, 512, 1);...