CellChat
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Incorrect documentation / use of thresh.pc argument
Hello,
in ?identifyOverExpressedGenes() it says that for thresh.pc Threshold of the percent of cells expressed in one cluster. However, in the code on multiple occasions such as https://github.com/jinworks/CellChat/blob/main/R/utilities.R#L374 you multiply this by 100, suggesting that either the "*100" needs to be removed everywhere or documentation must state that the argument takes the a fraction rather than percentage.
best wishes!
Initially posted to old https://github.com/sqjin/CellChat/issues/752
@ATpoint Thanks. Will use fraction in the next update.