473021677

Hi, I have used barrnap to predict rRNA genes. But there are two 16S rRNA genes (1210bp and 977bp). I am not sure if I should choose the longer 16S...

Big difference for different versions

10

Hi: I am using diamond to conduct the all-vs-all blastp analysis for the protein file with 1G file size. But I encountered one problem. When I using diamond v0.9.8.109, the...

WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow

2

Hello I am using MrBayes v3.2.7a to conduct bayesian inference analysis but the program aborted abnormally. It showed the errors "Setting number of generations to 2000000 WARNING: Reallocation of zero...

Segmentation fault (core dumped)

6

Hi, I am using sortmerna to remove rRNA from metatranscriptomic clean reads. However, the program terminated abnormally and the error "init_split_file/opt/pbs/dispatcher/mom_priv/jobs/86936.mgmt.SC: line 8: 109391 Segmentation fault (core dumped)" has been...

VIRSorter_global-phage-signal.csv has no content

18

When I was running VirSorter, it didn't report any error. But when the program finished, one result file, namely VIRSorter_global-phage-signal.csv hadn't any content. Can someone help me?

ERROR in counting kmers

3

Hi Ren: I am a phd student from SYSU, China. I have asked you some questions before and you are so patient to answer my questions. Now I have encountered...

unable to lock file, errno = 37, error message = 'No locks available'

2

Hi, I am trying to run inStrain profile, but I have encountered some problems. It shows "OSError: [Errno 37] Unable to synchronously create file (unable to lock file, errno =...

dial tcp [2607:f8b0:400a:80b::2011]:443: i/o timeout

1

Hi, I am trying to install mcorr. However, when I used the command "go get -u github.com/kussell-lab/mcorr/cmd/mcorr-xmfa" to install mcorr-xmfa, mcorr-bam, and mcorr-fit from the terminal, the process was aborted...

The 'final-viral-combined-for-dramv.fa' file contains longer sequences than that with the same ID in the "final-viral-combined.fa" file

1

Hi, I have used VirSorter2 to identify the viral genomes from the metagenome assemblies successfully. The command I have used was "virsorter run --prep-for-dramv -w DRTY10_201912_sfd_ge10kbp.out_v2 -i DRTY10_201912_sfd_ge10kbp.fa --min-length 10000...

ListUtil.c: loadable library and perl binaries are mismatched

1

Hi, I have installed DRAM and am trying to use DRAM-v to identify the AMGs. However, the program terminated abnormally. It shows that "The subcommand ['barrnap', '--threads', '20', 'dramv-annotate/working_dir/Thermal_system_virus_genomes-for-dramv/scaffolds.annotated.fa'] experienced...