473021677

Sorry, When I using diamond v0.9.8.109, the file size of the resulting daa file and m8 file is 97.85GB and 37.82GB, respectively. However, when I using diamond v, the file size of...

Sorry, When I using diamond v0.9.8.109, the file size of the resulting daa file and m8 file is 97.85GB and 37.82GB, respectively. However, when I using diamond v2.0.6, the file...

I have tried to run diamond v2.0.6 view with -k 250 and the resulting file sizes are similar to that of diamond v0.9.8.109. I will always run diamond v2.0.6 with...

Thanks for your comment. The program aborted for the nex file of 50 concatenated proteins. However, when I using the nex file of 16 concatenated ribosomal proteins, the result tree...

Hi jarrodscott: Yes. I am sure that there must be something wrong with the installation because many dependency packages have been needed during the installation. I cann't solve the problem....

Hi Jarrod It's my pleasure to help you. Best, Yuan ------------------ Original ------------------ From: "Jarrod"; Date: Wed, Jun 6, 2018 09:38 AM To: "simroux/VirSorter"; Cc: "473021677"; "Mention"; Subject: Re: [simroux/VirSorter]...

Thanks for your explanation. I have another question about the "--out2" parameter. I am not sure whether it only work if a single reads file is provided. It it is...

Hi, I have run SortMeRNA v4.3.6 with and without the "--out2" parameter. And I have found that one rRNA-filtered fastq file (JZ2_202101_fastp_rm_rRNA_v2.fq) has been generated for the run without "--out2"...

Hi, I have run SortMeRNA v4.3.6 with and without the "--out2" parameter and compared the metatranscriptomic reads mapping results. I have found that there are nearly no differences between the...

Hi Simon, Thanks for your explanation. But as described in the "DRAM-v in detail" section in the "https://github.com/WrightonLabCSU/DRAM/wiki/1.-How-DRAM-Works#dram-v-in-detail" website, a viral-like gene should be a VIRSorter protein cluster with category...