zyll123

Document Running Notebook over SSH Tunnel

2

I installed Jupyter in a virtual environment on the server using: ```bash pip install jupyterlab ``` And configured it as follows: ``` c.LabApp.ip = '' c.LabApp.password = u'sha1:*******' # not...

**Question**

Hi! I am wondering which variable represent the distance matrix that can be used in other dimensional reduction algorithms? I checked the codes and tried to use the affinity matrix...

Why h5ad files directly downloaded using wget, can't be identified by abc_cache.get_data_path() function?

1

I am downloading the WMB dataset. Because the `abc_cache.get_data_path` function is too slow, I used wget instead. I put the wget files using the same folder patterns asked by `abc_atlas_access`....

Dear authors, I find the nCount_ATAC in the metadata will decrease for all the cells after running `TSSEnrichment(ATAC, fast = FALSE)` for a Seurat object with snATAC data from several...