zswgzx
zswgzx
I have similar issue (i.e. No JRE found) using ubuntu 18.04 as base image, even after adding 'apt install default-jre' in the docker file. Have to switch to ubuntu 16.04...
thanks for the quick reply @kaczmarj ! will take a look and see if I still have any question :) The minify option would help for sure~
Looks like the cmd I used couldn't run through in the container with the trace in neurodocker minify option. ``` RuntimeError: Error: + printf 'NEURODOCKER (in container): ERROR: reprozip trace...
Sure if it helps (updated: it still doesn't work for the full version). Ran on ubuntu 18.04 and its docker image as base, with ver0.7.0 for neurodocker and a recent...
Have a feeling that the dependency may not be tracked as expected, @kaczmarj could you specify how to use that part? Thanks.
Now it's clear to me why all the funny messages appeared, so that if test command has multiple lines, they have to be separate. Maybe add this to the MD...
a simple cd command still won't work? here are the commands: ``` $ docker run --rm -itd --name fstest --security-opt=seccomp:unconfined -v $PWD:/test:rw mriinvivo.azurecr.io/fs6:21.0 $ echo $cmd1 cd /test/224241 $ neurodocker-minify...
Any update @kaczmarj about this simple cd command that failed? Thanks.
updated
> @zswgzx - thank you! Some tests are failing, do you want to check it. Have you tried to run tests locally using pytest? 1. not sure why windows related...