Zach Reitz

GSEA spawns multiple subprocesses and consumes all memory

2

I've noticed `GSEA` spawns ~ 2-12 `rsession` subprocesses with 2 threads each. Roughly every other time I try to run a loop of 200 GSEA analyses, GSEA hangs (~4k genes,...

After handling the [sub_feature AttributeError](https://github.com/apierleoni/BioGraPy/issues/7), I get another: ``` File "[path]/tracks.py", line 159, in _collapse bbox = fname.get_window_extent(dpi = dpi) TypeError: get_window_extent() got an unexpected keyword argument 'dpi' ``` I'm...

When using the code in [Draw a SeqRecord](http://apierleoni.github.io/BioGraPy/tutorial.html#draw-a-seqrecord), I get the following error: ``` File "[path]/seqrecord.py", line 50, in __init__ self.draw_features() File "[path]/seqrecord.py", line 80, in draw_features if feature.sub_features: AttributeError:...

gimme_taxa.py / ngd mismatched format

2

`ngd --taxids` seems to require `gimme_taxa.py` have the `-j`. Not sure if you want to update the documentation or one of the scripts? ``` $ gimme_taxa.py -o taxids.txt Hyphomicrobiales $...