zorino

Jira seem to have deprecated user / password authentication... is there a workaround for this ? ``` 2020-11-06 00:38:16,327 [main] INFO s.g.r.j.jira.AuthHandlerProvider - Using basic authentication 2020-11-06 00:38:16,332 [main] INFO...

just to keep your branch up to date with Surveyor

Overlapping contigs - ratio < 10%

1

When 2 contigs overlap and the ratio of that matching region is < 10% Ray won't merge those 2 contigs. Exemple : ``` Overlap=9142/9142 (100%) ``` -----------------------------------------------------> contig-28 length= 197810