zmaroti

Just opening the bgt-server without queries we get INFO on config parameters and the queryable sample/variant annotations from the FMF files: XXX.bgt.spl for samples, and from the annot.XXX.fmf.gz that was...

Dear Li, Since we have variant annotation (-d variantannot.fmf.gz option) and also the -a for query where we can select variants based on these annotations, it would be nice to...

In the get_frequencies() function the deletions and insertions are likely improperly handled. Please read the [mpileup specification](https://www.htslib.org/doc/1.14/samtools-mpileup.html). In one hand the -NUM+SEQ and the +NUM+SEQ notation only used at the...

This is a very minor issue which usually cause no differences, however it hinders comparability on large data sets. The problem only affects CRAM files, as the mpileup in this...