Zhisong He

icon indicating a website link http://zhisonghe.wixsite.com/home/ icon indicating an email [email protected]

icon company D-BSSE ETH Zurich icon location Basel, Switzerland icon location Computational biologist, senior assistant and lecturer at QuaDBio lab @quadbiolab in D-BSSE, ETH Zurich in Basel, Switzerland

Results 4 comments of Zhisong He

Problem CSS with corr_method

Sorry for no reply for such a long time. Are you still trying CSS and is the problem still there?

Error in checkna(X) : Missing values found in 'X' when running UMAP after

Do you have the same issue if you use the default spectrum type "corr_ztransform" instead of the current setting "corr_kernel"?

Error in features_usage[, "data"] : subscript out of bounds

Hi, both, Thanks for using CSS and yes, we have noticed this issue. We plan to look into it and find a solution, but due to the limited capacity right...

Extension of CSS to Python for data integration ?

Hi sorry for the late response. So far we don't yet have a python package for simspec, but a basic implementation can already be found here: https://github.com/quadbio/scRNAseq_analysis_python_vignette/blob/main/ext/simspec.py It is under...