zhangnan0107

Add "sort_by" in rank_genes_groups

1

- [x] Additional function parameters / changed functionality / changed defaults? - [ ] New analysis tool: A simple analysis tool you have been using and are missing in `sc.tools`?...

"ConvergenceWarning" in sklearn when calling ”sc.tl.rank_genes_groups“ with method='logreg'

1

- [x] I have checked that this issue has not already been reported. - [ ] I have confirmed this bug exists on the latest version of scanpy. - [...

Hi, I wonder is there any requirement regarding the order of the labels in `tag` when running Scissor. Specifically, if I would like to use a binary phenotype (e.g. 0...

Error creating track. Could not determine track type for file: .bedgraph

10

Dear Paul, Thanks for the useful tool! I got an error when trying to display Quantitative track using `displayTrack` function. Please see the screenshot for details. However, the error didn't...