Guoqiang Zhang
Guoqiang Zhang
Hi, Thanks for developing this package! With the increasing throughput of single cell technology, a lot more samples (individuals in the context of human tissue) are being sequenced. The variation...
Issue was discussed here: ``` https://github.com/hemberg-lab/SC3/issues/53 ``` This is a temp fix. The correlation function ```cor``` and ```ED2``` also need regular matrix as input, and converting the sparse matrix to...
Hi, Thanks so much for developing this package. I'm struggling to understand the direction of change for the significant pathways in the results. According to the Broad GSEA [website,](https://www.gsea-msigdb.org/gsea/doc/GSEAUserGuideTEXT.htm) ES...
Hi, This is for #1876 I added a new variable `groupby_expand` to dotplot and baseplot to allow the function using two variables from groupby as x and y axis. Thanks.
Hi, Thanks so much for developing this great single-cell visualization platform! I'm running in the server mode. Is there a way to add new users without using OAuth? Thanks!
Hi, I'm hoping to use rsync on a ubuntu 22.04 box that I don't have root access. There is a few precompiled binaries here: https://download.samba.org/pub/rsync/binaries/ubuntu-22.04-x86_64/ When I tried the binaries,...
Hi, For MIL models, how do I save the model at each epoch? And it is possible to re-start the training at specific epochs? ``` config = mil_config(model='attention_mil', lr=1e-4, batch_size=32,epochs=25,fit_one_cycle=False)...
Hi, I just want to bring your attention to a new feature extraction model: https://huggingface.co/bioptimus/H-optimus-0 This seems to be similar to gigapath but trained on more images. Might be something...
Hi, When we join two adata objects, usually we want to do inner join on the genes and outer join on the meta data (adata.obs). I understand that there is...